CNV Workshop: A web-enabled platform for analyzing genome variation such as copy number variation (CNV).
  • Compute CNV calls using a high-quality published algorithm, on or off a cluster.
  • Publish/view CNV calls via a sophisticated web application.
  • Visualize your CNVs in GBrowse and UCSC genome browser.
  • Support multiple labs/groups via user and group membership.
  • Download in XLS, CSV, XML, BED, and PDF format.
  • View GAD phenotype, DGV CNV, and gene annotation.
  • Compare your CNVs against the CHOP normals data set (healthy controls).
  • Link out to FABLE, Entrez, Entrez Gene, GAD, DGV, UCSC.
  • View hyperdiploidy/LOH reports.
  • Save personalized subsets of CNVs for viewing and downloading.
Find out More/Join Project
To find out more about CNV Workshop or to join the project, please visit the project summary page.


Support is provided through a Help and Open Discussion forum and a wiki.

Active tickets
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Source code
Source code for this project is available through its Subversion repository.

Screen shots

Search tab showing standard/basic search options for a user data set:

CNV Workshop screenshot

Search tab showing raw/advanced data search options for a user data set:

CNV Workshop screenshot

Search results page showing GBrowse visualization of a search region followed by tabular data:

CNV Workshop screenshot